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Manual coverage is now stored in the directory of the protected program. Manual coverage files are produced by each run of a program, and hopefully, for each form. manual_coverage_wrapper.sh accumulates the coverage now into one file after running all tests. 



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For manual PN tests, I have now made it the policy a manual test script must be supplied the transformed program AND the original. This requires alterations to bed_blackbox.sh and manual_coverage_wrapper.sh. The intent is to make my coreutil manual tests easier to automate and maintain.



Former-commit-id: 57e188ef92e7b735dd02bc72303e8f5df50ab97d

Added manual_coverage_wrapper.sh, to allow for generating coverage for manual tests, where the manual tests are performed based on a script. The current version requires pin be installed in a certain place with certain criteria, since PIN is not a part of the toolchain, talk to Ben if you plan on using this functionality. 

altered do_manual_cover.sh to support use of the new coverage generation script. This change only works if the user supplies a manual test script, if so, the script is used to generate test coverage using the manual_coverage_wrapper script. 



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